PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00261.1.p
Common NameEUGRSUZ_E00261
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 283aa    MW: 31325.2 Da    PI: 6.5071
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00261.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69e-161865148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l +++++ G g+W+  +++ g++R++k+c++rw +yl
  Eucgr.E00261.1.p 18 KGPWSAEEDAKLSEYIEKEGHGRWSDLPKKAGLNRCGKSCRLRWINYL 65
                      79********************************************97 PP

2Myb_DNA-binding52.61.1e-1671114146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+++ eE+  +++ + ++G++ W++Ia +++ gRt++++k++w++
  Eucgr.E00261.1.p  71 RGNFSDEEEAMIINFHSLYGNK-WSKIATHLQ-GRTDNEIKNHWNT 114
                       89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7411365IPR017930Myb domain
SuperFamilySSF466892.4E-3015112IPR009057Homeodomain-like
SMARTSM007173.4E-131767IPR001005SANT/Myb domain
PfamPF002491.6E-141865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-251972IPR009057Homeodomain-like
CDDcd001673.61E-102065No hitNo description
PROSITE profilePS5129427.61566120IPR017930Myb domain
SMARTSM007179.9E-1670118IPR001005SANT/Myb domain
PfamPF002494.7E-1571114IPR001005SANT/Myb domain
CDDcd001671.51E-1173114No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2673120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MVRSPCCSGD HEAEGLKKGP WSAEEDAKLS EYIEKEGHGR WSDLPKKAGL NRCGKSCRLR  60
WINYLRPDIK RGNFSDEEEA MIINFHSLYG NKWSKIATHL QGRTDNEIKN HWNTRMKKKL  120
LRMGIDPNTH KPRTDHLNQA MNLSQLLGTG GGPHLGSPPL SSLENAIANA AELAKLQLQS  180
LLHQAVNHSS PWPSYGGGFG VIRGDDNGGL CGDACMIQPE NPLPQLVSAS PEGSTVKNQF  240
ESESLPICSD WPTQSQALTF VEDWEKLLEE DTSASFLREI LQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-281612025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00261.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055297.10.0PREDICTED: transcription factor MYB39
SwissprotQ8GWP02e-67MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A059BZW20.0A0A059BZW2_EUCGR; Uncharacterized protein
STRINGVIT_16s0039g01710.t012e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-70myb domain protein 9